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我的應用程序循環遍歷包含S3目錄的文本文件的行，讀入它們，執行ETL過程，然後寫回到S3，它在同一個地方失敗了幾個（大約80個循環後），所以我認爲Spark沒有關閉我的S3連接，並且我分配的連接池已經耗盡。錯誤是：Spark和Amazon EMR：S3連接未關閉
16/09/14 19:30:49 INFO AmazonHttpClient: Unable to execute HTTP request: Timeout waiting for connection from pool
com.amazon.ws.emr.hadoop.fs.shaded.org.apache.http.conn.ConnectionPoolTimeoutException: Timeout waiting for connection from pool
at com.amazon.ws.emr.hadoop.fs.shaded.org.apache.http.impl.conn.PoolingClientConnectionManager.leaseConnection(PoolingClientConnectionManager.java:226)
at com.amazon.ws.emr.hadoop.fs.shaded.org.apache.http.impl.conn.PoolingClientConnectionManager$1.getConnection(PoolingClientConnectionManager.java:195)
at sun.reflect.GeneratedMethodAccessor13.invoke(Unknown Source)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at com.amazon.ws.emr.hadoop.fs.shaded.com.amazonaws.http.conn.ClientConnectionRequestFactory$Handler.invoke(ClientConnectionRequestFactory.java:70)
at com.amazon.ws.emr.hadoop.fs.shaded.com.amazonaws.http.conn.$Proxy37.getConnection(Unknown Source)
at com.amazon.ws.emr.hadoop.fs.shaded.org.apache.http.impl.client.DefaultRequestDirector.execute(DefaultRequestDirector.java:423)
at com.amazon.ws.emr.hadoop.fs.shaded.org.apache.http.impl.client.AbstractHttpClient.doExecute(AbstractHttpClient.java:863)
at com.amazon.ws.emr.hadoop.fs.shaded.org.apache.http.impl.client.CloseableHttpClient.execute(CloseableHttpClient.java:82)
at com.amazon.ws.emr.hadoop.fs.shaded.org.apache.http.impl.client.CloseableHttpClient.execute(CloseableHttpClient.java:57)
at com.amazon.ws.emr.hadoop.fs.shaded.com.amazonaws.http.AmazonHttpClient.executeOneRequest(AmazonHttpClient.java:837)
at com.amazon.ws.emr.hadoop.fs.shaded.com.amazonaws.http.AmazonHttpClient.executeHelper(AmazonHttpClient.java:607)
at com.amazon.ws.emr.hadoop.fs.shaded.com.amazonaws.http.AmazonHttpClient.doExecute(AmazonHttpClient.java:376)
at com.amazon.ws.emr.hadoop.fs.shaded.com.amazonaws.http.AmazonHttpClient.executeWithTimer(AmazonHttpClient.java:338)
at com.amazon.ws.emr.hadoop.fs.shaded.com.amazonaws.http.AmazonHttpClient.execute(AmazonHttpClient.java:287)
at com.amazon.ws.emr.hadoop.fs.shaded.com.amazonaws.services.s3.AmazonS3Client.invoke(AmazonS3Client.java:3826)
at com.amazon.ws.emr.hadoop.fs.shaded.com.amazonaws.services.s3.AmazonS3Client.getObjectMetadata(AmazonS3Client.java:1015)
at com.amazon.ws.emr.hadoop.fs.shaded.com.amazonaws.services.s3.AmazonS3Client.getObjectMetadata(AmazonS3Client.java:991)
at com.amazon.ws.emr.hadoop.fs.s3n.Jets3tNativeFileSystemStore.retrieveMetadata(Jets3tNativeFileSystemStore.java:212)
at sun.reflect.GeneratedMethodAccessor15.invoke(Unknown Source)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at org.apache.hadoop.io.retry.RetryInvocationHandler.invokeMethod(RetryInvocationHandler.java:191)
at org.apache.hadoop.io.retry.RetryInvocationHandler.invoke(RetryInvocationHandler.java:102)
at com.sun.proxy.$Proxy36.retrieveMetadata(Unknown Source)
at com.amazon.ws.emr.hadoop.fs.s3n.S3NativeFileSystem.getFileStatus(S3NativeFileSystem.java:780)
at org.apache.hadoop.fs.FileSystem.exists(FileSystem.java:1428)
at com.amazon.ws.emr.hadoop.fs.EmrFileSystem.exists(EmrFileSystem.java:313)
at org.apache.spark.sql.execution.datasources.DataSource.hasMetadata(DataSource.scala:289)
at org.apache.spark.sql.execution.datasources.DataSource.resolveRelation(DataSource.scala:324)
at org.apache.spark.sql.execution.datasources.DataSource$$anonfun$18.apply(DataSource.scala:452)
at org.apache.spark.sql.execution.datasources.DataSource$$anonfun$18.apply(DataSource.scala:458)
at scala.util.Try$.apply(Try.scala:192)
at org.apache.spark.sql.execution.datasources.DataSource.write(DataSource.scala:451)
at org.apache.spark.sql.DataFrameWriter.save(DataFrameWriter.scala:211)
at org.apache.spark.sql.DataFrameWriter.save(DataFrameWriter.scala:194)
at com.databricks.spark.avro.package$AvroDataFrameWriter$$anonfun$avro$1.apply(package.scala:26)
at com.databricks.spark.avro.package$AvroDataFrameWriter$$anonfun$avro$1.apply(package.scala:26)
at com.webpt.SparkMaxwell$$anonfun$main$1.apply(SparkMaxwell.scala:116)
at com.webpt.SparkMaxwell$$anonfun$main$1.apply(SparkMaxwell.scala:105)
at scala.collection.IndexedSeqOptimized$class.foreach(IndexedSeqOptimized.scala:33)
at scala.collection.mutable.ArrayOps$ofRef.foreach(ArrayOps.scala:186)
at com.webpt.SparkMaxwell$.main(SparkMaxwell.scala:105)
at com.webpt.SparkMaxwell.main(SparkMaxwell.scala)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at org.apache.spark.deploy.SparkSubmit$.org$apache$spark$deploy$SparkSubmit$$runMain(SparkSubmit.scala:729)
at org.apache.spark.deploy.SparkSubmit$.doRunMain$1(SparkSubmit.scala:185)
at org.apache.spark.deploy.SparkSubmit$.submit(SparkSubmit.scala:210)
at org.apache.spark.deploy.SparkSubmit$.main(SparkSubmit.scala:124)
at org.apache.spark.deploy.SparkSubmit.main(SparkSubmit.scala)
相關代碼：
val primaryKeyFile = sparkSession.sparkContext.textFile(keys)
for(line <- primaryKeyFile.collect()){
//keys text file is of syntax tableName (tab) key,key,key
val (tableName, tableKeys) = (line.split("\t")(0).toLowerCase(), line.split("\t")(1).toLowerCase.split(",").toSeq)
//if the table exists in master
if (FileSystem.get(new URI(s"$lake/$tableName/$yesterday"), sparkSession.sparkContext.hadoopConfiguration)
.exists(new Path(s"$lake/$tableName/$yesterday"))) {
if (!distinctTables.contains(tableName)) {
//if exists only in master
//read in the master data from yesterday and copy it to today after changing columns to lower case
val masterDF = sparkSession.sqlContext.read.avro(s"$lake/$tableName/$yesterday/*").repartition(1500)
masterDF.select(masterDF.columns.map(name => col(name).as(name.toLowerCase())): _*).write.mode("append").avro(s"$lake/$tableName/$today")
}
else {
//if exists both in master and input
//filter out all unrelated data out of the testFreeDF
val soloDF = testFreeDF.filter(lower(col("table")).equalTo(tableName))
//Replace the encrypted data column with a decrypted data column, then turn each row into strings so sqlContext.read.json can read the json string into a DF
val decryptedDF = sparkSession.sqlContext.read.json(soloDF.withColumn("data", decryptUDF(soloDF("data"))).select("data").rdd.map(row => row.toString()))
//lowercase the column names by selecting the column names in lower case
val lowerCaseDF = decryptedDF.select(decryptedDF.columns.map(name => col(name).as(name.toLowerCase())): _*)
//read in masterDF and create list of columns in lower case so we can check for schema changes
val masterDF = sparkSession.sqlContext.read.avro(s"$lake/$tableName/$yesterday/*").repartition(1500)
val lowerCaseDFColumns = lowerCaseDF.columns
val lowerCaseMasterDFColumns = masterDF.columns.map(column => column.toLowerCase)
//if the columns are the same..
if (lowerCaseDFColumns.toSet == lowerCaseMasterDFColumns.toSet) {
//union the two tables adding a new old/new column, input data with value of 2, master data with value of 1
val finalFrame: DataFrame = lowerCaseDF.withColumn("old/new", lit("2")).union(masterDF.select(masterDF.columns.map(name => col(name).as(name.toLowerCase())): _*).withColumn("old/new", lit("1"))).repartition(1500)
masterDF.unpersist()
lowerCaseDF.unpersist()
val mergeWindowFunction = Window.partitionBy(tableKeys.head, tableKeys.tail: _*).orderBy(desc("old/new"))
//call window function, partitions by the primary keys and orders by old/new, for each partition the highest old/new is kept, meaning duplicates in master are dropped
finalFrame.withColumn("rownum", row_number.over(mergeWindowFunction)).where("rownum = 1")
.drop("rownum").drop("old/new").write.mode("append").avro(s"$lake/$tableName/$today")
finalFrame.unpersist()
}
//if we have different columns then we need to adjust, in the end we want to keep all columns
else {
//create select statements for each dataframe that maintains existing columns, and adds null columns for the columns they don't have
val masterExprs = lowerCaseDFColumns.union(lowerCaseMasterDFColumns).distinct.map(field =>
//if the field already exists in master schema, we add the name to our select statement
if (lowerCaseMasterDFColumns.contains(field)) {
col(field.toLowerCase)
}
//else, we hardcode a null column in for that name
else {
lit(null).alias(field.toLowerCase)
}
)
//same thing for input, maybe we could get this down to one map()
val inputExprs = lowerCaseDFColumns.union(lowerCaseMasterDFColumns).distinct.map(field =>
//if the field already exists in master schema, we add the name to our select statement
if (lowerCaseDFColumns.contains(field)) {
col(field.toLowerCase)
}
//else, we hardcode a null column in for that name
else {
lit(null).alias(field.toLowerCase)
}
)
val mergeWindowFunction = Window.partitionBy(tableKeys.head, tableKeys.tail: _*).orderBy(desc("old/new"))
//same process, we just use our select statements beforehand
masterDF.select(masterExprs: _*).withColumn("old/new", lit("2"))
.union(lowerCaseDF.select(inputExprs: _*).withColumn("old/new", lit("1"))).repartition(1500)
.withColumn("rownum", row_number.over(mergeWindowFunction)).where("rownum = 1").drop("rownum")
.drop("old/new").write.mode("append").avro(s"$lake/$tableName/$today")
masterDF.unpersist()
lowerCaseDF.unpersist()
}
}
}
else {
if (distinctTables.contains(tableName)) {
//if the input doesn't exist in master, we filter out unrelated data, decrypt it, set the columns to be lower case, and then write it to master
val soloDF = testFreeDF.filter(lower(col("table")).equalTo(tableName))
val decryptedDF = sparkSession.sqlContext.read.json(soloDF.withColumn("data", decryptUDF(soloDF("data"))).select("data").rdd.map(row => row.toString()))
val lowerCaseDF = decryptedDF.select(decryptedDF.columns.map(name => col(name).as(name.toLowerCase())): _*)
lowerCaseDF.select(decryptedDF.columns.map(name => col(name).as(name.toLowerCase())): _*).write.mode("append").avro(s"$lake/$tableName/$today")
}
}
}
線，它的失敗上：
masterDF.select(masterDF.columns.map(name => col(name).as(name.toLowerCase())): _*).write.mode("append").avro(s"$lake/$tableName/$today")
所以，我該怎麼辦？有什麼方法可以確保Spark在讀取/寫入S3之後關閉連接？
鏈接我所做的一些相關問題以及我收到的一些回覆： https://issues.apache.org/jira/browse/SPARK-17544# https://github.com/databricks/spark -avro/issues/156 看起來是火花或火花的問題 –