在並行模式下運行時,全局變量會發生什麼?MATLAB:在並行模式下運行時,全局變量會發生什麼?
我有一個全局變量「to_be_optimized_parameterIndexSet」,它是一個應該使用gamultiobj進行優化的索引向量,我只在主腳本(無處)中設置了它的值。
我的代碼在串行模式下正常工作,但當我切換到並行模式(使用「matlabpool open」併爲'gaoptimset'設置適當的值)時,所提到的全局變量在適應函數中變爲空(= [])這個錯誤:
??? Error using ==> parallel_function at 598
Error in ==> PF_gaMultiFitness at 15 [THIS LINE: constants(to_be_optimized_parameterIndexSet) = individual;]
In an assignment A(I) = B, the number of elements in B and
I must be the same.
Error in ==> fcnvectorizer at 17
parfor (i = 1:popSize)
Error in ==> gamultiobjMakeState at 52
Score =
fcnvectorizer(state.Population(initScoreProvided+1:end,:),FitnessFcn,numObj,options.SerialUserFcn);
Error in ==> gamultiobjsolve at 11
state = gamultiobjMakeState(GenomeLength,FitnessFcn,output.problemtype,options);
E rror in ==> gamultiobj at 238
[x,fval,exitFlag,output,population,scores] = gamultiobjsolve(FitnessFcn,nvars, ...
Error in ==> PF_GA_mainScript at 136
[x, fval, exitflag, output] = gamultiobj(@(individual)PF_gaMultiFitness(individual, initialConstants), ...
Caused by:
Failure in user-supplied fitness function evaluation. GA cannot continue.
我檢查了所有的代碼,以確保我沒有改變這個全局變量在其他地方。
我有一個四核處理器。
錯誤在哪裏?任何建議?
編輯1:在主腳本中的MATLAB代碼:
clc
clear
close all
format short g
global simulation_duration % PF_gaMultiFitness will use this variable
global to_be_optimized_parameterIndexSet % PF_gaMultiFitness will use this variable
global IC stimulusMoment % PF_gaMultiFitness will use these variables
[initialConstants IC] = oldCICR_Constants; %initialize state
to_be_optimized_parameterIndexSet = [21 22 23 24 25 26 27 28 17 20];
LB = [ 0.97667 0.38185 0.63529 0.046564 0.23207 0.87484 0.46014 0.0030636 0.46494 0.82407 ];
UB = [1.8486 0.68292 0.87129 0.87814 0.66982 1.3819 0.64562 0.15456 1.3717 1.8168];
PopulationSize = input('Population size? ') ;
GaTimeLimit = input('GA time limit? (second) ');
matlabpool open
nGenerations = inf;
options = gaoptimset('PopulationSize', PopulationSize, 'TimeLimit',GaTimeLimit, 'Generations', nGenerations, ...
'Vectorized','off', 'UseParallel','always');
[x, fval, exitflag, output] = gamultiobj(@(individual)PF_gaMultiFitness(individual, initialConstants), ...
length(to_be_optimized_parameterIndexSet),[],[],[],[],LB,UB,options);
matlabpool close
some other piece of code to show the results...
的健身功能, 「PF_gaMultiFitness」 的MATLAB代碼:
function objectives =PF_gaMultiFitness(individual, constants)
global simulation_duration IC stimulusMoment to_be_optimized_parameterIndexSet
%THIS FUNCTION RETURNS MULTI OBJECTIVES AND PUTS EACH OBJECTIVE IN A COLUMN
constants(to_be_optimized_parameterIndexSet) = individual;
[smcState , ~, Time]= oldCICR_CompCore(constants, IC, simulation_duration,2);
targetValue = 1; % [uM]desired [Ca]i peak concentration
afterStimulus = smcState(Time>stimulusMoment,14); % values of [Ca]i after stimulus
peak_Ca_value = max(afterStimulus); % smcState(:,14) is [Ca]i
if peak_Ca_value < 0.8 * targetValue
objectives(1,1) = inf;
else
objectives(1, 1) = abs(peak_Ca_value - targetValue);
end
pkIDX = peakFinder(afterStimulus);
nPeaks = sum(pkIDX);
if nPeaks > 1
peakIndexes = find(pkIDX);
period = Time(peakIndexes(2)) - Time(peakIndexes(1));
objectives(1,2) = 1e5* 1/period;
elseif nPeaks == 1 && peak_Ca_value > 0.8 * targetValue
objectives(1,2) = 0;
else
objectives(1,2) = inf;
end
end
它說:「另外,你不能在parfor循環體內定義全局變量或持久變量,我還建議小心使用全局變量,因爲工作變量全局值不會自動反映到局部全局值中。 「然而,我並不是在par-for循環中「定義全局變量」,而且我也沒有改變worker中全局變量的值。我在客戶端定義了全局變量,並在工作人員中使用它們。 –
順便說一下,在修改全局變量以便它們被明確地傳遞之後,問題得到了解決,但它沒有在MATLAB中編寫,它幫助您不能通過全局變量向工作人員發送信息。 –
如何修改代碼以明確傳遞它們?我有一個全局配置(無論是編程圖,是否將文件寫入文件系統)存儲在全局結構中,我只想讀取工作人員,這就是爲什麼我問。 – Ronny