如何.sif文件轉換成JSON Cytoscape中JS使用

Question

我有這樣

NodeA "phosphorylation" NodeB 
NodeA "binding"  NodeC 
NodeB "phosphorylation" NodeC 
NodeD "binding"  NodeC 

我想這能轉換成JSON可通過Cytoscape的JS消耗，以產生一個.sif文件使用節點及其關係的圖表。

我需要它像

[ 
    {"data":{"id":"n40","weight":53},"position":  
    {"x":50,"y":45},"group":"nodes","removed":false,"selected":false, 
    "selectable":true,"locked":false,"grabbable":true,"classes":""}, 

    {"data":{"id":"n41","weight":23},"position":  
    {"x":150,"y":45},"group":"nodes","removed":false, 
    "selected":false,"selectable":true,"locked":false, 
    "grabbable":true,"classes":""}, 

    .......................... 

    {"data":{"id":"e129","weight":31,"source":"n65","target":"n58"}, 
    "position":{},"group":"edges","removed":false,"selected":false, 
    "selectable":true,"locked":false,"grabbable":true,"classes":""}, 

    {"data":{"id":"e131","weight":90,"source":"n53","target":"n43"}, 
    "position:{},"group":"edges","removed":false,"selected":false, 
    "selectable":true,"locked":false,"grabbable":true,"classes":""}, 
] 

Answer 1

您是否嘗試過SIF.js格式？我在npm上發現它：https://www.npmjs.com/package/sif.js

它與Cytoscape的JSON格式並不完全相同，但您可以使用它和.map()這些條目，以便它們匹配。或者您可以使用the repo中的代碼構建您自己的解析函數，直接輸出Cytoscape format。

您也可以使用Cytoscape desktop software將SIF轉換爲JSON，但不能作爲JS應用程序的一部分自動執行。