2015-07-12 56 views
10

將R從3.1.3升級到3.2.1後,我無法安裝來自CRAN的軟件包。 錯誤消息是無法加載共享對象internet.so。R-3.2.1無法加載共享對象internet.so

install.packages("randomForest") 
Installing package into ‘/gs/project/feb-684-aa/BIF/R/R-3.2.1/library’ (as ‘lib’ is unspecified) 
--- Please select a CRAN mirror for use in this session --- 
Error in url("http://cran.r-project.org/CRAN_mirrors.csv") : 
    internet routines cannot be loaded 
In addition: Warning message: 
In url("http://cran.r-project.org/CRAN_mirrors.csv") : 
    unable to load shared object '/software/areas/ircm/tools/R-3.2.1/lib64/R/modules//internet.so': 
    /software/areas/ircm/tools/R-3.2.1/lib64/R/modules//internet.so: undefined symbol: curl_multi_wait 
> sessionInfo() 
R version 3.2.1 (2015-06-18) 
Platform: x86_64-unknown-linux-gnu (64-bit) 
Running under: CentOS release 6.5 (Final) 

locale: 
[1] LC_CTYPE=en_CA.UTF-8  LC_NUMERIC=C    
[3] LC_TIME=en_CA.UTF-8  LC_COLLATE=en_CA.UTF-8  
[5] LC_MONETARY=en_CA.UTF-8 LC_MESSAGES=en_CA.UTF-8 
[7] LC_PAPER=en_CA.UTF-8  LC_NAME=C     
[9] LC_ADDRESS=C    LC_TELEPHONE=C    
[11] LC_MEASUREMENT=en_CA.UTF-8 LC_IDENTIFICATION=C  

attached base packages: 
[1] stats  graphics grDevices utils  datasets methods base  

other attached packages: 
[1] nvimcom_0.9-8 

loaded via a namespace (and not attached): 
[1] tools_3.2.1 

[[email protected] BIF]$ ls /software/areas/ircm/tools/R-3.2.1/lib64/R/modules//internet.so -l 
-rwxrwxr-x 1 blancha feb-684-01 275221 Jul 12 09:47 /software/areas/ircm/tools/R-3.2.1/lib64/R/modules//internet.so 

以下帖子似乎是爲了解決類似的問題。 Error in install.packages: internet routines cannot be loaded using StatET while it works in R console

+2

你怎麼安裝R?通過官方軟件倉庫?看來你安裝的R版本與curl的安裝版本不兼容。更具體地說,R需要一個curl函數'''''curl_multi_wait''',這似乎是在2013年左右的curl中引入的。你的curl版本可能比這個更早。 – mdiener

+1

根據[documentation](http://curl.haxx.se/libcurl/c/curl_multi_wait.html),curl/libcurl的最低版本應爲7.28.0。你安裝了哪個版本? – mdiener

+0

我已經安裝了curl 7.35版本。 我已更新至7.43,並重新安裝了R-3.2.1。 我仍然得到完全相同的錯誤版本。 R-3.2.1是從CRAN下載的。 我是從源碼包安裝的。 wget http://cran.utstat.utoronto.ca/src/base/R-3/R-3.2.1.tar.gz – Alex

回答

3

固定! 謝謝@David Robinson的建議。他們讓我走上正軌。

我剛添加下面的命令來我.bash_profile,問題得到了解決:

export LD_LIBRARY_PATH=$TOOLS/curl-7.43.0/lib:$LD_LIBRARY_PATH