如何進來只能與腳本bash的新目錄

Question

#!/bin/bash 

#cicle 1 
for fname in *.xlsx *csv 
    do 
      dname=${fname%.*} 

      [[ -d $dname ]] || mkdir "$dname" 
      mv "$fname" "$dname" 
    done 

    # In questo ciclo per ogni gene entra nella cartella e lancia i programmi di getChromosomicPositions.sh per avere 
    # le posizioni nel genoma, e getHapolotipeStings.sh per avere le varianti 

#cicle 2 
    for geni in */; do 
      cd $geni 
      z=$(tail -n 1 *.csv | tr ';' "\n" | wc -l) # geuarda nel file csv quante colonne ci sono e trasferisce il riusltato al programma getChromosomicPositions 
      cd .. 
      cp getHGSVposHG19.sh $geni 
      cp getChromosomicPositions.sh $geni 
      cp getHaplotypeStrings.sh $geni 
      cd $geni 
      pippo=$(basename $(pwd)) 
      export z 
      export pippo 
      ./getChromosomicPositions.sh *.csv 
      export z 
      ./getHaplotypeStrings.sh *.csv 
      cd .. 
    done 

我有這個腳本2 cicle，

我想是在cicle 2只爲創建新的目錄做compilate程序的工作在cicle 1

我的意思是：

我有這個文件的主要目錄：

pippo.xlsx pippo.csv

caio.xlsx caio.csv

topolino（目錄）

敏妮（目錄）

paperino（目錄）

在cicle 1使directorys皮波

和卡歐

我希望在cicle 2我想要在新目錄（pippo，caio）中出現，並將cicle的所有工作僅限於新目錄pippo和caio，而不是舊目錄topolino ，minny和paperino。

我該怎麼做？

Answer 1

你可以創建一個數組與新創建的目錄，然後在這個數組循環：

#!/bin/bash 
set -o errexit # Exit the script in case of error 

# Pre-declare and empty array. 
declare -a new_directories; 

# Save other scripts path for later use. 
getHGSVposHG19="${pwd}/getHGSVposHG19.sh" 
getChromosomicPositions="${pwd}/getChromosomicPositions.sh" 
getHaplotypeStrings="${pwd}/getHaplotypeStrings.sh" 

# Create missing directories 
for fname in *.xlsx *csv 
do 
    dname=${fname%.*} 
    if [ ! -d $dname ] 
    then 
     mkdir "$dname"; 
     new_directories+=("${dname}"); 
    fi 

    mv "$fname" "$dname"; 
done 

# Initialize only new directories 
for geni in "${new_directories[@]}" 
do 
    pushd "${geni}"; # Add to directory stack 

    export pippo="$(basename $(pwd))"; 
    export z=$(tail -n 1 *.csv | tr ';' "\n" | wc -l) 

    "${getChromosomicPositions}" *.csv; 
    export z; # Is the previous script modifying z? 

    "${getHaplotypeStrings}" *.csv; 
    popd; #Remove from directory stack 
done 

我也冒昧地清理你的腳本一點，因爲我不能運行它是，它可能有一些拼寫錯誤/缺陷......

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What is pushd and popd?