2016-12-22 97 views
0

我正在Jupyter上開發圖表,並且由於networkx沒有提供良好的圖形表示形式,我嘗試使用GraphViz軟件包,更具體地說找到了發現的軟件包有:https://github.com/chebee7i/nxpd無法訪問GraphViz可執行文件,即使在PATH中添加GraphViz文件夾

我第一次進口nxpd包,但是當我試圖在draw()函數,我遇到這個錯誤:

InvocationException: GraphViz's executables not found.

我首先想到的是它,因爲我沒有安裝pygraphviz包,這是我試圖這樣做,但我現在面對這樣的錯誤:

Collecting pygraphviz 
    Using cached pygraphviz-1.3.1.zip 
Building wheels for collected packages: pygraphviz 
    Running setup.py bdist_wheel for pygraphviz: started 
    Running setup.py bdist_wheel for pygraphviz: finished with status 'error' 
    Complete output from command "D:\Program Files (x86)\Anaconda3\python.exe" -u -c "import setuptools, tokenize;__file__='C:\\Users\\VPELL_~1\\AppData\\Local\\Temp\\pip-build-vs56t5f2\\pygraphviz\\setup.py';exec(compile(getattr(tokenize, 'open', open)(__file__).read().replace('\r\n', '\n'), __file__, 'exec'))" bdist_wheel -d C:\Users\VPELL_~1\AppData\Local\Temp\tmpqiovc8brpip-wheel- --python-tag cp35: 
    running bdist_wheel 
    running build 
    running build_py 
    creating build 
    creating build\lib.win-amd64-3.5 
    creating build\lib.win-amd64-3.5\pygraphviz 
    copying pygraphviz\agraph.py -> build\lib.win-amd64-3.5\pygraphviz 
    copying pygraphviz\graphviz.py -> build\lib.win-amd64-3.5\pygraphviz 
    copying pygraphviz\release.py -> build\lib.win-amd64-3.5\pygraphviz 
    copying pygraphviz\version.py -> build\lib.win-amd64-3.5\pygraphviz 
    copying pygraphviz\__init__.py -> build\lib.win-amd64-3.5\pygraphviz 
    creating build\lib.win-amd64-3.5\pygraphviz\tests 
    copying pygraphviz\tests\test.py -> build\lib.win-amd64-3.5\pygraphviz\tests 
    copying pygraphviz\tests\test_attributes.py -> build\lib.win-amd64-3.5\pygraphviz\tests 
    copying pygraphviz\tests\test_attribute_defaults.py -> build\lib.win-amd64-3.5\pygraphviz\tests 
    copying pygraphviz\tests\test_clear.py -> build\lib.win-amd64-3.5\pygraphviz\tests 
    copying pygraphviz\tests\test_drawing.py -> build\lib.win-amd64-3.5\pygraphviz\tests 
    copying pygraphviz\tests\test_edge_attributes.py -> build\lib.win-amd64-3.5\pygraphviz\tests 
    copying pygraphviz\tests\test_graph.py -> build\lib.win-amd64-3.5\pygraphviz\tests 
    copying pygraphviz\tests\test_html.py -> build\lib.win-amd64-3.5\pygraphviz\tests 
    copying pygraphviz\tests\test_layout.py -> build\lib.win-amd64-3.5\pygraphviz\tests 
    copying pygraphviz\tests\test_node_attributes.py -> build\lib.win-amd64-3.5\pygraphviz\tests 
    copying pygraphviz\tests\test_readwrite.py -> build\lib.win-amd64-3.5\pygraphviz\tests 
    copying pygraphviz\tests\test_string.py -> build\lib.win-amd64-3.5\pygraphviz\tests 
    copying pygraphviz\tests\test_subgraph.py -> build\lib.win-amd64-3.5\pygraphviz\tests 
    copying pygraphviz\tests\test_unicode.py -> build\lib.win-amd64-3.5\pygraphviz\tests 
    copying pygraphviz\tests\__init__.py -> build\lib.win-amd64-3.5\pygraphviz\tests 
    running egg_info 
    writing dependency_links to pygraphviz.egg-info\dependency_links.txt 
    writing top-level names to pygraphviz.egg-info\top_level.txt 
    writing pygraphviz.egg-info\PKG-INFO 
    warning: manifest_maker: standard file '-c' not found 

    reading manifest file 'pygraphviz.egg-info\SOURCES.txt' 
    reading manifest template 'MANIFEST.in' 
    warning: no previously-included files matching '*~' found anywhere in distribution 
    warning: no previously-included files matching '*.pyc' found anywhere in distribution 
    warning: no previously-included files matching '.svn' found anywhere in distribution 
    no previously-included directories found matching 'doc\build' 
    writing manifest file 'pygraphviz.egg-info\SOURCES.txt' 
    copying pygraphviz\graphviz.i -> build\lib.win-amd64-3.5\pygraphviz 
    copying pygraphviz\graphviz_wrap.c -> build\lib.win-amd64-3.5\pygraphviz 
    running build_ext 
    building 'pygraphviz._graphviz' extension 
    creating build\temp.win-amd64-3.5 
    creating build\temp.win-amd64-3.5\Release 
    creating build\temp.win-amd64-3.5\Release\pygraphviz 
    C:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\BIN\x86_amd64\cl.exe /c /nologo /Ox /W3 /GL /DNDEBUG /MD "-ID:\Program Files (x86)\Anaconda3\include" "-ID:\Program Files (x86)\Anaconda3\include" "-IC:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\INCLUDE" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.10240.0\ucrt" "-IC:\Program Files (x86)\Windows Kits\8.1\include\shared" "-IC:\Program Files (x86)\Windows Kits\8.1\include\um" "-IC:\Program Files (x86)\Windows Kits\8.1\include\winrt" /Tcpygraphviz/graphviz_wrap.c /Fobuild\temp.win-amd64-3.5\Release\pygraphviz/graphviz_wrap.obj 
    graphviz_wrap.c 
    pygraphviz/graphviz_wrap.c(2954): fatal error C1083: Cannot open include file: 'graphviz/cgraph.h': No such file or directory 
    error: command 'C:\\Program Files (x86)\\Microsoft Visual Studio 14.0\\VC\\BIN\\x86_amd64\\cl.exe' failed with exit status 2 

    ---------------------------------------- 
    Running setup.py clean for pygraphviz 
Failed to build pygraphviz 
Installing collected packages: pygraphviz 
    Running setup.py install for pygraphviz: started 
    Running setup.py install for pygraphviz: finished with status 'error' 
    Complete output from command "D:\Program Files (x86)\Anaconda3\python.exe" -u -c "import setuptools, tokenize;__file__='C:\\Users\\VPELL_~1\\AppData\\Local\\Temp\\pip-build-vs56t5f2\\pygraphviz\\setup.py';exec(compile(getattr(tokenize, 'open', open)(__file__).read().replace('\r\n', '\n'), __file__, 'exec'))" install --record C:\Users\VPELL_~1\AppData\Local\Temp\pip-fplxc9at-record\install-record.txt --single-version-externally-managed --compile: 
    running install 
    include_dirs=None 
    library_dirs=None 
    running build 
    running build_py 
    creating build 
    creating build\lib.win-amd64-3.5 
    creating build\lib.win-amd64-3.5\pygraphviz 
    copying pygraphviz\agraph.py -> build\lib.win-amd64-3.5\pygraphviz 
    copying pygraphviz\graphviz.py -> build\lib.win-amd64-3.5\pygraphviz 
    copying pygraphviz\release.py -> build\lib.win-amd64-3.5\pygraphviz 
    copying pygraphviz\version.py -> build\lib.win-amd64-3.5\pygraphviz 
    copying pygraphviz\__init__.py -> build\lib.win-amd64-3.5\pygraphviz 
    creating build\lib.win-amd64-3.5\pygraphviz\tests 
    copying pygraphviz\tests\test.py -> build\lib.win-amd64-3.5\pygraphviz\tests 
    copying pygraphviz\tests\test_attributes.py -> build\lib.win-amd64-3.5\pygraphviz\tests 
    copying pygraphviz\tests\test_attribute_defaults.py -> build\lib.win-amd64-3.5\pygraphviz\tests 
    copying pygraphviz\tests\test_clear.py -> build\lib.win-amd64-3.5\pygraphviz\tests 
    copying pygraphviz\tests\test_drawing.py -> build\lib.win-amd64-3.5\pygraphviz\tests 
    copying pygraphviz\tests\test_edge_attributes.py -> build\lib.win-amd64-3.5\pygraphviz\tests 
    copying pygraphviz\tests\test_graph.py -> build\lib.win-amd64-3.5\pygraphviz\tests 
    copying pygraphviz\tests\test_html.py -> build\lib.win-amd64-3.5\pygraphviz\tests 
    copying pygraphviz\tests\test_layout.py -> build\lib.win-amd64-3.5\pygraphviz\tests 
    copying pygraphviz\tests\test_node_attributes.py -> build\lib.win-amd64-3.5\pygraphviz\tests 
    copying pygraphviz\tests\test_readwrite.py -> build\lib.win-amd64-3.5\pygraphviz\tests 
    copying pygraphviz\tests\test_string.py -> build\lib.win-amd64-3.5\pygraphviz\tests 
    copying pygraphviz\tests\test_subgraph.py -> build\lib.win-amd64-3.5\pygraphviz\tests 
    copying pygraphviz\tests\test_unicode.py -> build\lib.win-amd64-3.5\pygraphviz\tests 
    copying pygraphviz\tests\__init__.py -> build\lib.win-amd64-3.5\pygraphviz\tests 
    running egg_info 
    writing dependency_links to pygraphviz.egg-info\dependency_links.txt 
    writing pygraphviz.egg-info\PKG-INFO 
    writing top-level names to pygraphviz.egg-info\top_level.txt 
    warning: manifest_maker: standard file '-c' not found 

    reading manifest file 'pygraphviz.egg-info\SOURCES.txt' 
    reading manifest template 'MANIFEST.in' 
    warning: no previously-included files matching '*~' found anywhere in distribution 
    warning: no previously-included files matching '*.pyc' found anywhere in distribution 
    warning: no previously-included files matching '.svn' found anywhere in distribution 
    no previously-included directories found matching 'doc\build' 
    writing manifest file 'pygraphviz.egg-info\SOURCES.txt' 
    copying pygraphviz\graphviz.i -> build\lib.win-amd64-3.5\pygraphviz 
    copying pygraphviz\graphviz_wrap.c -> build\lib.win-amd64-3.5\pygraphviz 
    running build_ext 
    building 'pygraphviz._graphviz' extension 
    creating build\temp.win-amd64-3.5 
    creating build\temp.win-amd64-3.5\Release 
    creating build\temp.win-amd64-3.5\Release\pygraphviz 
    C:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\BIN\x86_amd64\cl.exe /c /nologo /Ox /W3 /GL /DNDEBUG /MD -INone "-ID:\Program Files (x86)\Anaconda3\include" "-ID:\Program Files (x86)\Anaconda3\include" "-IC:\Program Files (x86)\Microsoft Visual Studio 14.0\VC\INCLUDE" "-IC:\Program Files (x86)\Windows Kits\10\include\10.0.10240.0\ucrt" "-IC:\Program Files (x86)\Windows Kits\8.1\include\shared" "-IC:\Program Files (x86)\Windows Kits\8.1\include\um" "-IC:\Program Files (x86)\Windows Kits\8.1\include\winrt" /Tcpygraphviz/graphviz_wrap.c /Fobuild\temp.win-amd64-3.5\Release\pygraphviz/graphviz_wrap.obj 
    graphviz_wrap.c 
    pygraphviz/graphviz_wrap.c(2954): fatal error C1083: Cannot open include file: 'graphviz/cgraph.h': No such file or directory 
    error: command 'C:\\Program Files (x86)\\Microsoft Visual Studio 14.0\\VC\\BIN\\x86_amd64\\cl.exe' failed with exit status 2 

    ---------------------------------------- 
    Failed building wheel for pygraphviz 
Command ""D:\Program Files (x86)\Anaconda3\python.exe" -u -c "import setuptools, tokenize;__file__='C:\\Users\\VPELL_~1\\AppData\\Local\\Temp\\pip-build-vs56t5f2\\pygraphviz\\setup.py';exec(compile(getattr(tokenize, 'open', open)(__file__).read().replace('\r\n', '\n'), __file__, 'exec'))" install --record C:\Users\VPELL_~1\AppData\Local\Temp\pip-fplxc9at-record\install-record.txt --single-version-externally-managed --compile" failed with error code 1 in C:\Users\VPELL_~1\AppData\Local\Temp\pip-build-vs56t5f2\pygraphviz\ 
You are using pip version 8.1.2, however version 9.0.1 is available. 
You should consider upgrading via the 'python -m pip install --upgrade pip' command. 

在計算器上搜索後,我添加這些目錄:

D:\Program Files (x86)\Anaconda3\Lib\site-packages\graphviz\bin 
D:\Program Files (x86)\Anaconda3\Lib\site-packages\graphviz\include\graphviz 

我的路徑,但它沒有改變任何東西。

謝謝你的幫助。

回答

0

你在命令提示符下使用添加路徑:

PATH = %PATH%;<new path stuff> 

或者你使用系統屬性中的環境變量添加呢?

我發現我需要添加它使用系統屬性,使其系統寬;它只在使用命令提示符添加時仍然不起作用。

0

嘗試使用os.environ在jupyter筆記本本身中添加路徑。

import os 
os.environ["PATH"] += os.pathsep + 'C:/Program Files (x86)/Graphviz2.38/bin/' 
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