如何恢復損壞的Neo4j圖形數據庫

我目前使用spring data neo4j 2.1.0（community edition）。如何恢復損壞的Neo4j圖形數據庫

偶爾我會管理破壞數據庫和/或數據庫索引。

我已經收集了以下恢復步驟，但希望有一個更爲確定的未來使用的。

恢復損壞的數據庫。我目前數據庫中的數據目錄獨此過程中，刪除以下文件似乎工作90％的時間：

nioneo_logical.log.v *（通配符號）

nioneo_logical.log.active

我想知道是否可以從數據目錄中刪除任何其他文件以幫助恢復，尤其是可以刪除data \ index目錄中的任何文件（無需重建索引）。

非常感謝。

messages.log

2013-12-16 10:41:40,516 ERROR [neo4j.index]: Failed to load index provider lucene 
org.neo4j.graphdb.NotFoundException: Target file[lucene.log.v3] already exists 
    at org.neo4j.kernel.impl.util.FileUtils.renameFile(FileUtils.java:192) ~[neo4j-kernel-1.8.jar:1.8] 
    at org.neo4j.kernel.DefaultFileSystemAbstraction.renameFile(DefaultFileSystemAbstraction.java:77) ~[neo4j-kernel-1.8.jar:1.8] 
    at org.neo4j.kernel.impl.transaction.xaframework.XaLogicalLog.renameLogFileToRightVersion(XaLogicalLog.java:683) ~[neo4j-kernel-1.8.jar:1.8] 
    at org.neo4j.kernel.impl.transaction.xaframework.XaLogicalLog.renameIfExists(XaLogicalLog.java:181) ~[neo4j-kernel-1.8.jar:1.8] 
    at org.neo4j.kernel.impl.transaction.xaframework.XaLogicalLog.open(XaLogicalLog.java:150) ~[neo4j-kernel-1.8.jar:1.8] 
    at org.neo4j.kernel.impl.transaction.xaframework.XaContainer.openLogicalLog(XaContainer.java:64) ~[neo4j-kernel-1.8.jar:1.8] 
    at org.neo4j.index.impl.lucene.LuceneDataSource.<init>(LuceneDataSource.java:232) ~[neo4j-lucene-index-1.8.jar:1.8] 
    at org.neo4j.index.lucene.LuceneIndexProvider.load(LuceneIndexProvider.java:72) ~[neo4j-lucene-index-1.8.jar:1.8] 
    at org.neo4j.kernel.InternalAbstractGraphDatabase$DefaultKernelExtensionLoader.loadIndexImplementations(InternalAbstractGraphDatabase.java:1171) [neo4j-kernel-1.8.jar:1.8] 
    at org.neo4j.kernel.InternalAbstractGraphDatabase$DefaultKernelExtensionLoader.init(InternalAbstractGraphDatabase.java:1143) [neo4j-kernel-1.8.jar:1.8] 
    at org.neo4j.kernel.lifecycle.LifeSupport$LifecycleInstance.init(LifeSupport.java:382) [neo4j-kernel-1.8.jar:1.8] 
    at org.neo4j.kernel.lifecycle.LifeSupport.init(LifeSupport.java:82) [neo4j-kernel-1.8.jar:1.8] 
    at org.neo4j.kernel.lifecycle.LifeSupport.start(LifeSupport.java:116) [neo4j-kernel-1.8.jar:1.8] 
    at org.neo4j.kernel.InternalAbstractGraphDatabase.run(InternalAbstractGraphDatabase.java:227) [neo4j-kernel-1.8.jar:1.8] 
    at org.neo4j.kernel.EmbeddedGraphDatabase.<init>(EmbeddedGraphDatabase.java:79) [neo4j-kernel-1.8.jar:1.8] 
    at org.neo4j.kernel.EmbeddedGraphDatabase.<init>(EmbeddedGraphDatabase.java:70) [neo4j-kernel-1.8.jar:1.8] 
    at org.neo4j.kernel.EmbeddedGraphDatabase.<init>(EmbeddedGraphDatabase.java:55) [neo4j-kernel-1.8.jar:1.8] 
    at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method) [na:1.6.0_27] 
    at sun.reflect.NativeConstructorAccessorImpl.newInstance(Unknown Source) [na:1.6.0_27] 
    at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(Unknown Source) [na:1.6.0_27] 
    at java.lang.reflect.Constructor.newInstance(Unknown Source) [na:1.6.0_27] 
    at org.springframework.beans.BeanUtils.instantiateClass(BeanUtils.java:126) [spring-beans-3.0.7.RELEASE.jar:3.0.7.RELEASE] 
    at org.springframework.beans.factory.support.SimpleInstantiationStrategy.instantiate(SimpleInstantiationStrategy.java:108) [spring-beans-3.0.7.RELEASE.jar:3.0.7.RELEASE] 
    at org.springframework.beans.factory.support.ConstructorResolver.autowireConstructor(ConstructorResolver.java:280) [spring-beans-3.0.7.RELEASE.jar:3.0.7.RELEASE] 
    at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.autowireConstructor(AbstractAutowireCapableBeanFactory.java:1002) [spring-beans-3.0.7.RELEASE.jar:3.0.7.RELEASE] 
    at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBeanInstance(AbstractAutowireCapableBeanFactory.java:906) [spring-beans-3.0.7.RELEASE.jar:3.0.7.RELEASE] 
    at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:484) [spring-beans-3.0.7.RELEASE.jar:3.0.7.RELEASE] 
    at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:455) [spring-beans-3.0.7.RELEASE.jar:3.0.7.RELEASE] 
    at org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:293) [spring-beans-3.0.7.RELEASE.jar:3.0.7.RELEASE] 
    at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:222) [spring-beans-3.0.7.RELEASE.jar:3.0.7.RELEASE] 
    at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:290) [spring-beans-3.0.7.RELEASE.jar:3.0.7.RELEASE] 
    at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:192) [spring-beans-3.0.7.RELEASE.jar:3.0.7.RELEASE] 
    at org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveReference(BeanDefinitionValueResolver.java:322) [spring-beans-3.0.7.RELEASE.jar:3.0.7.RELEASE] 
    at org.springframework.beans.factory.support.BeanDefinitionValueResolver.resolveValueIfNecessary(BeanDefinitionValueResolver.java:106) [spring-beans-3.0.7.RELEASE.jar:3.0.7.RELEASE] 
    at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.applyPropertyValues(AbstractAutowireCapableBeanFactory.java:1327) [spring-beans-3.0.7.RELEASE.jar:3.0.7.RELEASE] 
    at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.populateBean(AbstractAutowireCapableBeanFactory.java:1085) [spring-beans-3.0.7.RELEASE.jar:3.0.7.RELEASE] 
    at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:516) [spring-beans-3.0.7.RELEASE.jar:3.0.7.RELEASE] 
    at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:455) [spring-beans-3.0.7.RELEASE.jar:3.0.7.RELEASE] 
    at org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:293) [spring-beans-3.0.7.RELEASE.jar:3.0.7.RELEASE] 
    at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:222) [spring-beans-3.0.7.RELEASE.jar:3.0.7.RELEASE] 
    at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:290) [spring-beans-3.0.7.RELEASE.jar:3.0.7.RELEASE] 
    at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:192) [spring-beans-3.0.7.RELEASE.jar:3.0.7.RELEASE] 
    at org.springframework.beans.factory.support.ConstructorResolver.instantiateUsingFactoryMethod(ConstructorResolver.java:353) [spring-beans-3.0.7.RELEASE.jar:3.0.7.RELEASE] 
    at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.instantiateUsingFactoryMethod(AbstractAutowireCapableBeanFactory.java:982) [spring-beans-3.0.7.RELEASE.jar:3.0.7.RELEASE] 
    at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBeanInstance(AbstractAutowireCapableBeanFactory.java:878) [spring-beans-3.0.7.RELEASE.jar:3.0.7.RELEASE] 
    at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.getSingletonFactoryBeanForTypeCheck(AbstractAutowireCapableBeanFactory.java:734) [spring-beans-3.0.7.RELEASE.jar:3.0.7.RELEASE] 
    at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.getTypeForFactoryBean(AbstractAutowireCapableBeanFactory.java:665) [spring-beans-3.0.7.RELEASE.jar:3.0.7.RELEASE] 
    at org.springframework.beans.factory.support.AbstractBeanFactory.isTypeMatch(AbstractBeanFactory.java:518) [spring-beans-3.0.7.RELEASE.jar:3.0.7.RELEASE] 
    at org.springframework.beans.factory.support.DefaultListableBeanFactory.getBeanNamesForType(DefaultListableBeanFactory.java:319) [spring-beans-3.0.7.RELEASE.jar:3.0.7.RELEASE] 
    at org.springframework.beans.factory.BeanFactoryUtils.beanNamesForTypeIncludingAncestors(BeanFactoryUtils.java:185) [spring-beans-3.0.7.RELEASE.jar:3.0.7.RELEASE] 
    at org.springframework.beans.factory.support.DefaultListableBeanFactory.findAutowireCandidates(DefaultListableBeanFactory.java:833) [spring-beans-3.0.7.RELEASE.jar:3.0.7.RELEASE] 
    at org.springframework.beans.factory.support.DefaultListableBeanFactory.doResolveDependency(DefaultListableBeanFactory.java:790) [spring-beans-3.0.7.RELEASE.jar:3.0.7.RELEASE] 
    at org.springframework.beans.factory.support.DefaultListableBeanFactory.resolveDependency(DefaultListableBeanFactory.java:707) [spring-beans-3.0.7.RELEASE.jar:3.0.7.RELEASE] 
    at org.springframework.beans.factory.annotation.AutowiredAnnotationBeanPostProcessor$AutowiredFieldElement.inject(AutowiredAnnotationBeanPostProcessor.java:478) [spring-beans-3.0.7.RELEASE.jar:3.0.7.RELEASE] 
    at org.springframework.beans.factory.annotation.InjectionMetadata.inject(InjectionMetadata.java:84) [spring-beans-3.0.7.RELEASE.jar:3.0.7.RELEASE] 
    at org.springframework.beans.factory.annotation.AutowiredAnnotationBeanPostProcessor.postProcessPropertyValues(AutowiredAnnotationBeanPostProcessor.java:284) [spring-beans-3.0.7.RELEASE.jar:3.0.7.RELEASE] 
    at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.populateBean(AbstractAutowireCapableBeanFactory.java:1073) [spring-beans-3.0.7.RELEASE.jar:3.0.7.RELEASE] 
    at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:516) [spring-beans-3.0.7.RELEASE.jar:3.0.7.RELEASE] 
    at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:455) [spring-beans-3.0.7.RELEASE.jar:3.0.7.RELEASE] 
    at org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:293) [spring-beans-3.0.7.RELEASE.jar:3.0.7.RELEASE] 
    at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:222) [spring-beans-3.0.7.RELEASE.jar:3.0.7.RELEASE] 
    at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:290) [spring-beans-3.0.7.RELEASE.jar:3.0.7.RELEASE] 
    at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:192) [spring-beans-3.0.7.RELEASE.jar:3.0.7.RELEASE] 
    at org.springframework.beans.factory.support.DefaultListableBeanFactory.preInstantiateSingletons(DefaultListableBeanFactory.java:585) [spring-beans-3.0.7.RELEASE.jar:3.0.7.RELEASE] 
    at org.springframework.context.support.AbstractApplicationContext.finishBeanFactoryInitialization(AbstractApplicationContext.java:895) [spring-context-3.0.7.RELEASE.jar:3.0.7.RELEASE] 
    at org.springframework.context.support.AbstractApplicationContext.refresh(AbstractApplicationContext.java:425) [spring-context-3.0.7.RELEASE.jar:3.0.7.RELEASE] 
    at org.springframework.context.support.FileSystemXmlApplicationContext.<init>(FileSystemXmlApplicationContext.java:140) [spring-context-3.0.7.RELEASE.jar:3.0.7.RELEASE] 
    at org.springframework.context.support.FileSystemXmlApplicationContext.<init>(FileSystemXmlApplicationContext.java:84) [spring-context-3.0.7.RELEASE.jar:3.0.7.RELEASE] 
    at com.ci.server.ContextManager.initSinkServer(ContextManager.java:120) [CiDataConverter-0.0.1-SNAPSHOT.jar:na] 
    at com.ci.server.Server.buildContext(Server.java:263) [CiDataConverter-0.0.1-SNAPSHOT.jar:na] 
    at com.ci.server.Server.runServer(Server.java:76) [CiDataConverter-0.0.1-SNAPSHOT.jar:na] 
    at com.ci.server.ServerMain.main(ServerMain.java:21) [CiDataConverter-0.0.1-SNAPSHOT.jar:na] 
2013-12-16 10:41:40,524 DEBUG [neo4j.diagnostics]: --- SHUTDOWN diagnostics START --- 
2013-12-16 10:41:40,524 DEBUG [neo4j.diagnostics]: --- SHUTDOWN diagnostics END ---

我的應用程序日誌文件

SEVERE: Error initialising Neo4J context: 
org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'ciFinDomainServiceImpl': Injection of autowired dependencies failed; nested exception is org.springframework.beans.factory.BeanCreationException: Could not autowire field: private GelatoData.domainFinService.impl.FinancialRepository GelatoData.domainFinService.impl.CiFinDomainServiceImpl.financialRepository; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'org.springframework.data.neo4j.config.Neo4jConfiguration#0': Cannot resolve reference to bean 'graphDatabaseService' while setting bean property 'graphDatabaseService'; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'graphDatabaseService' defined in file [C:\app\Gelato\server\etc\GelatoServerData.xml]: Instantiation of bean failed; nested exception is org.springframework.beans.BeanInstantiationException: Could not instantiate bean class [org.neo4j.kernel.EmbeddedGraphDatabase]: Constructor threw exception; nested exception is org.neo4j.graphdb.NotFoundException: Target file[nioneo_logical.log.v2] already exists 
Related cause: org.springframework.beans.factory.BeanCurrentlyInCreationException: Error creating bean with name 'mappingInfrastructure': Requested bean is currently in creation: Is there an unresolvable circular reference? 
    at org.springframework.beans.factory.annotation.AutowiredAnnotationBeanPostProcessor.postProcessPropertyValues(AutowiredAnnotationBeanPostProcessor.java:287) 
    at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.populateBean(AbstractAutowireCapableBeanFactory.java:1073) 
    at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:516) 
    at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:455) 
    at org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:293) 
    at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:222) 
    at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:290) 
    at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:192) 
    at org.springframework.beans.factory.support.DefaultListableBeanFactory.preInstantiateSingletons(DefaultListableBeanFactory.java:585) 
    at org.springframework.context.support.AbstractApplicationContext.finishBeanFactoryInitialization(AbstractApplicationContext.java:895) 
    at org.springframework.context.support.AbstractApplicationContext.refresh(AbstractApplicationContext.java:425) 
    at org.springframework.context.support.FileSystemXmlApplicationContext.<init>(FileSystemXmlApplicationContext.java:140) 
    at org.springframework.context.support.FileSystemXmlApplicationContext.<init>(FileSystemXmlApplicationContext.java:84) 
    at com.ci.server.ContextManager.initSinkServer(ContextManager.java:120) 
    at com.ci.server.Server.buildContext(Server.java:263) 
    at com.ci.server.Server.runServer(Server.java:76) 
    at com.ci.server.ServerMain.main(ServerMain.java:21) 
Caused by: org.springframework.beans.factory.BeanCreationException: Could not autowire field: private GelatoData.domainFinService.impl.FinancialRepository GelatoData.domainFinService.impl.CiFinDomainServiceImpl.financialRepository; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'org.springframework.data.neo4j.config.Neo4jConfiguration#0': Cannot resolve reference to bean 'graphDatabaseService' while setting bean property 'graphDatabaseService'; nested exception is org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'graphDatabaseService' defined in file [C:\app\Gelato\server\etc\GelatoServerData.xml]: Instantiation of bean failed; nested exception is org.springframework.beans.BeanInstantiationException: Could not instantiate bean class [org.neo4j.kernel.EmbeddedGraphDatabase]: Constructor threw exception; nested exception is org.neo4j.graphdb.NotFoundException: Target file[nioneo_logical.log.v2] already exists 
    at org.springframework.beans.factory.annotation.AutowiredAnnotationBeanPostProcessor$AutowiredFieldElement.inject(AutowiredAnnotationBeanPostProcessor.java:506) 
    at org.springframework.beans.factory.annotation.InjectionMetadata.inject(InjectionMetadata.java:84) 
    at org.springframework.beans.factory.annotation.AutowiredAnnotationBeanPostProcessor.postProcessPropertyValues(AutowiredAnnotationBeanPostProcessor.java:284) 
    ... 16 more

Neo4j的數據目錄內容

Volume in drive C is OS 
Volume Serial Number is 8861-7230 

Directory of C:\app_data\gelato\data 

16/12/2013 10:49 <DIR>   . 
16/12/2013 10:49 <DIR>   .. 
25/11/2013 13:12    11 active_tx_log 
16/12/2013 10:38 <DIR>   index 
25/11/2013 13:42    1,571 index.db 
25/11/2013 13:14     0 lock 
16/12/2013 10:41   289,837 messages.log 
16/12/2013 10:41    54 neostore 
16/12/2013 10:41     9 neostore.id 
10/12/2013 17:32   25,164 neostore.nodestore.db 
16/12/2013 10:41     9 neostore.nodestore.db.id 
16/12/2013 10:41   5,535,000 neostore.propertystore.db 
25/11/2013 13:14    128 neostore.propertystore.db.arrays 
16/12/2013 10:41     9 neostore.propertystore.db.arrays.id 
16/12/2013 10:41     9 neostore.propertystore.db.id 
10/12/2013 17:32    1,044 neostore.propertystore.db.index 
16/12/2013 10:41     9 neostore.propertystore.db.index.id 
10/12/2013 17:32    1,026 neostore.propertystore.db.index.keys 
16/12/2013 10:41     9 neostore.propertystore.db.index.keys.id 
10/12/2013 17:32   3,379,456 neostore.propertystore.db.strings 
16/12/2013 10:41     9 neostore.propertystore.db.strings.id 
10/12/2013 17:32   1,132,461 neostore.relationshipstore.db 
16/12/2013 10:41     9 neostore.relationshipstore.db.id 
16/12/2013 10:41    10 neostore.relationshiptypestore.db 
16/12/2013 10:41     9 neostore.relationshiptypestore.db.id 
10/12/2013 17:32    114 neostore.relationshiptypestore.db.names 
16/12/2013 10:41     9 neostore.relationshiptypestore.db.names.id 
16/12/2013 10:42    612 nioneo_logical.log.2 
16/12/2013 10:41     4 nioneo_logical.log.active 
10/12/2013 14:32   353,479 nioneo_logical.log.v0 
10/12/2013 17:32  14,659,211 nioneo_logical.log.v1 
10/12/2013 17:18  26,214,477 nioneo_logical.log.v2 
25/11/2013 13:12   2,022,220 rrd 
16/12/2013 10:40    176 tm_tx_log.1 
       32 File(s)  53,616,145 bytes 
       3 Dir(s) 881,749,417,984 bytes free

Neo4j的索引目錄

Volume in drive C is OS 
Volume Serial Number is 8861-7230 

Directory of C:\app_data\gelato\data\index 

16/12/2013 10:49 <DIR>   . 
16/12/2013 10:49 <DIR>   .. 
16/12/2013 10:38 <DIR>   lucene 
16/12/2013 10:41    40 lucene-store.db 
16/12/2013 10:41    16 lucene.log.1 
16/12/2013 10:40     4 lucene.log.active 
25/11/2013 13:13    382 lucene.log.v0 
25/11/2013 13:44  26,945,214 lucene.log.v1 
10/12/2013 17:32   392,983 lucene.log.v2 
10/12/2013 17:18  26,214,420 lucene.log.v3 
10/12/2013 17:18  26,214,553 lucene.log.v4 
       9 File(s)  79,767,612 bytes 
       3 Dir(s) 881,749,921,792 bytes free

來源

2013-12-12 Robert

你是什麼意思'腐敗的數據庫'。你只是指不潔的關機？ –

通常我可以將這歸因於不潔的關閉，但它也發生在感知的正常操作中。 – Robert

你的節目'neo4j.0.0.log'或'console.log'可以嗎？ – Evgenii

通常，neo4j會在啓動時恢復事務日誌。

如果這不起作用的原因，請與我們分享評論中提到的日誌文件以及graph.db/messsages.log。

您不應該刪除事務日誌（您實際上會這樣做）以及哪些會導致數據丟失。

來源

2013-12-16 01:32:08

我已將日誌文件添加到原始問題。 – Robert

如何恢復損壞的Neo4j圖形數據庫

回答

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