0
我有一個由大約10000個具有兩個特徵的樣本組成的數據集。我想用ELKI來運行LSDBC算法並對我的數據集進行聚類。但是，我一直無法讓ELKI工作。在運行elki-0.7.0.jar並將所需的設置輸入到gui中後，無論我選擇什麼設置，我都會在gui底部的控制檯輸入中獲得一長串錯誤消息（我還沒有能力輸入所有我想要的設置）。這對我來說，表明我錯過了一些依賴關係，錯過了一些安裝步驟，或者某種程度上沒有正確使用該軟件。ELKI找不到類gnu/trove/impl/hash/TObjectHash
不幸的是，似乎沒有很多關於ELKI的文檔，但它也是LSDBC的唯一實現之一，我已經能夠找到。我正在尋找的是一步一步的ELI5，在我的數據集（它位於WEKA創建的arff文件中）上安裝並運行此算法並將結果輸出爲csv文件的說明;即指示每個樣本的聚類分配的輸出文件。我還希望能夠對最優的k和alpha值進行網格搜索（即，運行k和alpha的幾個值的算法並保存每個結果;之後我將確定最優值）。我正在使用Mac OS X Yosemite。
我覺得這應該是一個相對直接的任務，但我還沒有取得任何進展。我已經複製了我一直得到的錯誤流
gnu/trove/impl/hash/TObjectHash
java.lang.NoClassDefFoundError: gnu/trove/impl/hash/TObjectHash
at java.lang.ClassLoader.defineClass1(Native Method)
at java.lang.ClassLoader.defineClass(ClassLoader.java:760)
at java.security.SecureClassLoader.defineClass(SecureClassLoader.java:142)
at java.net.URLClassLoader.defineClass(URLClassLoader.java:467)
at java.net.URLClassLoader.access$100(URLClassLoader.java:73)
at java.net.URLClassLoader$1.run(URLClassLoader.java:368)
at java.net.URLClassLoader$1.run(URLClassLoader.java:362)
at java.security.AccessController.doPrivileged(Native Method)
at java.net.URLClassLoader.findClass(URLClassLoader.java:361)
at java.lang.ClassLoader.loadClass(ClassLoader.java:424)
at sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:331)
at java.lang.ClassLoader.loadClass(ClassLoader.java:357)
at de.lmu.ifi.dbs.elki.datasource.parser.NumberVectorLabelParser.<init>(NumberVectorLabelParser.java:127)
at de.lmu.ifi.dbs.elki.datasource.parser.NumberVectorLabelParser$Parameterizer.makeInstance(NumberVectorLabelParser.java:419)
at de.lmu.ifi.dbs.elki.datasource.parser.NumberVectorLabelParser$Parameterizer.makeInstance(NumberVectorLabelParser.java:355)
at de.lmu.ifi.dbs.elki.utilities.optionhandling.AbstractParameterizer.make(AbstractParameterizer.java:120)
at de.lmu.ifi.dbs.elki.utilities.ClassGenericsUtil.tryInstantiate(ClassGenericsUtil.java:252)
at de.lmu.ifi.dbs.elki.utilities.optionhandling.parameters.ClassParameter.instantiateClass(ClassParameter.java:234)
at de.lmu.ifi.dbs.elki.utilities.optionhandling.parameters.ObjectParameter.instantiateClass(ObjectParameter.java:152)
at de.lmu.ifi.dbs.elki.datasource.AbstractDatabaseConnection$Parameterizer.configParser(AbstractDatabaseConnection.java:184)
at de.lmu.ifi.dbs.elki.datasource.InputStreamDatabaseConnection$Parameterizer.makeOptions(InputStreamDatabaseConnection.java:136)
at de.lmu.ifi.dbs.elki.datasource.FileBasedDatabaseConnection$Parameterizer.makeOptions(FileBasedDatabaseConnection.java:123)
at de.lmu.ifi.dbs.elki.utilities.optionhandling.AbstractParameterizer.make(AbstractParameterizer.java:116)
at de.lmu.ifi.dbs.elki.utilities.ClassGenericsUtil.tryInstantiate(ClassGenericsUtil.java:252)
at de.lmu.ifi.dbs.elki.utilities.optionhandling.parameters.ClassParameter.instantiateClass(ClassParameter.java:234)
at de.lmu.ifi.dbs.elki.utilities.optionhandling.parameters.ObjectParameter.instantiateClass(ObjectParameter.java:152)
at de.lmu.ifi.dbs.elki.database.StaticArrayDatabase$Parameterizer.makeOptions(StaticArrayDatabase.java:210)
at de.lmu.ifi.dbs.elki.utilities.optionhandling.AbstractParameterizer.make(AbstractParameterizer.java:116)
at de.lmu.ifi.dbs.elki.utilities.ClassGenericsUtil.tryInstantiate(ClassGenericsUtil.java:252)
at de.lmu.ifi.dbs.elki.utilities.optionhandling.parameters.ClassParameter.instantiateClass(ClassParameter.java:234)
at de.lmu.ifi.dbs.elki.utilities.optionhandling.parameters.ObjectParameter.instantiateClass(ObjectParameter.java:152)
at de.lmu.ifi.dbs.elki.workflow.InputStep$Parameterizer.makeOptions(InputStep.java:94)
at de.lmu.ifi.dbs.elki.utilities.optionhandling.AbstractParameterizer.make(AbstractParameterizer.java:116)
at de.lmu.ifi.dbs.elki.utilities.ClassGenericsUtil.tryInstantiate(ClassGenericsUtil.java:252)
at de.lmu.ifi.dbs.elki.utilities.optionhandling.parameterization.TrackParameters.tryInstantiate(TrackParameters.java:213)
at de.lmu.ifi.dbs.elki.KDDTask$Parameterizer.makeOptions(KDDTask.java:156)
at de.lmu.ifi.dbs.elki.utilities.optionhandling.AbstractParameterizer.make(AbstractParameterizer.java:116)
at de.lmu.ifi.dbs.elki.utilities.ClassGenericsUtil.tryInstantiate(ClassGenericsUtil.java:252)
at de.lmu.ifi.dbs.elki.utilities.optionhandling.parameterization.TrackParameters.tryInstantiate(TrackParameters.java:213)
at de.lmu.ifi.dbs.elki.application.KDDCLIApplication$Parameterizer.makeOptions(KDDCLIApplication.java:79)
at de.lmu.ifi.dbs.elki.utilities.optionhandling.AbstractParameterizer.make(AbstractParameterizer.java:116)
at de.lmu.ifi.dbs.elki.utilities.ClassGenericsUtil.tryInstantiate(ClassGenericsUtil.java:252)
at de.lmu.ifi.dbs.elki.utilities.optionhandling.parameterization.TrackParameters.tryInstantiate(TrackParameters.java:213)
at de.lmu.ifi.dbs.elki.gui.minigui.MiniGUI.doSetParameters(MiniGUI.java:372)
at de.lmu.ifi.dbs.elki.gui.minigui.MiniGUI.updateParameterTable(MiniGUI.java:359)
at de.lmu.ifi.dbs.elki.gui.minigui.MiniGUI$5.tableChanged(MiniGUI.java:277)
at javax.swing.table.AbstractTableModel.fireTableChanged(AbstractTableModel.java:296)
at javax.swing.table.AbstractTableModel.fireTableCellUpdated(AbstractTableModel.java:275)
at de.lmu.ifi.dbs.elki.gui.util.ParametersModel.setValueAt(ParametersModel.java:130)
at javax.swing.JTable.setValueAt(JTable.java:2741)
at javax.swing.JTable.editingStopped(JTable.java:4723)
at javax.swing.AbstractCellEditor.fireEditingStopped(AbstractCellEditor.java:141)
at javax.swing.AbstractCellEditor.stopCellEditing(AbstractCellEditor.java:85)
at javax.swing.plaf.basic.BasicTableUI$Handler.mousePressed(BasicTableUI.java:1010)
at javax.swing.plaf.basic.BasicTableUI$MouseInputHandler.mousePressed(BasicTableUI.java:798)
at java.awt.AWTEventMulticaster.mousePressed(AWTEventMulticaster.java:280)
at java.awt.Component.processMouseEvent(Component.java:6532)
at javax.swing.JComponent.processMouseEvent(JComponent.java:3324)
at java.awt.Component.processEvent(Component.java:6300)
at java.awt.Container.processEvent(Container.java:2236)
at java.awt.Component.dispatchEventImpl(Component.java:4891)
at java.awt.Container.dispatchEventImpl(Container.java:2294)
at java.awt.Component.dispatchEvent(Component.java:4713)
at java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4888)
at java.awt.LightweightDispatcher.processMouseEvent(Container.java:4522)
at java.awt.LightweightDispatcher.dispatchEvent(Container.java:4466)
at java.awt.Container.dispatchEventImpl(Container.java:2280)
at java.awt.Window.dispatchEventImpl(Window.java:2750)
at java.awt.Component.dispatchEvent(Component.java:4713)
at [...]
Caused by: java.lang.ClassNotFoundException: gnu.trove.impl.hash.TObjectHash
at java.net.URLClassLoader.findClass(URLClassLoader.java:381)
at java.lang.ClassLoader.loadClass(ClassLoader.java:424)
at sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:331)
at java.lang.ClassLoader.loadClass(ClassLoader.java:357)
at java.lang.ClassLoader.defineClass1(Native Method)
at java.lang.ClassLoader.defineClass(ClassLoader.java:760)
at java.security.SecureClassLoader.defineClass(SecureClassLoader.java:142)
at java.net.URLClassLoader.defineClass(URLClassLoader.java:467)
at java.net.URLClassLoader.access$100(URLClassLoader.java:73)
at java.net.URLClassLoader$1.run(URLClassLoader.java:368)
at java.net.URLClassLoader$1.run(URLClassLoader.java:362)
at java.security.AccessController.doPrivileged(Native Method)
at java.net.URLClassLoader.findClass(URLClassLoader.java:361)
at java.lang.ClassLoader.loadClass(ClassLoader.java:424)
at sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:331)
at java.lang.ClassLoader.loadClass(ClassLoader.java:357)
at de.lmu.ifi.dbs.elki.datasource.parser.NumberVectorLabelParser.<init>(NumberVectorLabelParser.java:127)
at de.lmu.ifi.dbs.elki.datasource.parser.NumberVectorLabelParser$Parameterizer.makeInstance(NumberVectorLabelParser.java:419)
at de.lmu.ifi.dbs.elki.datasource.parser.NumberVectorLabelParser$Parameterizer.makeInstance(NumberVectorLabelParser.java:355)
at de.lmu.ifi.dbs.elki.utilities.optionhandling.AbstractParameterizer.make(AbstractParameterizer.java:120)
at de.lmu.ifi.dbs.elki.utilities.ClassGenericsUtil.tryInstantiate(ClassGenericsUtil.java:252)
at de.lmu.ifi.dbs.elki.utilities.optionhandling.parameters.ClassParameter.instantiateClass(ClassParameter.java:234)
at de.lmu.ifi.dbs.elki.utilities.optionhandling.parameters.ObjectParameter.instantiateClass(ObjectParameter.java:152)
at de.lmu.ifi.dbs.elki.datasource.AbstractDatabaseConnection$Parameterizer.configParser(AbstractDatabaseConnection.java:184)
at de.lmu.ifi.dbs.elki.datasource.InputStreamDatabaseConnection$Parameterizer.makeOptions(InputStreamDatabaseConnection.java:136)
at de.lmu.ifi.dbs.elki.datasource.FileBasedDatabaseConnection$Parameterizer.makeOptions(FileBasedDatabaseConnection.java:123)
at de.lmu.ifi.dbs.elki.utilities.optionhandling.AbstractParameterizer.make(AbstractParameterizer.java:116)
at de.lmu.ifi.dbs.elki.utilities.ClassGenericsUtil.tryInstantiate(ClassGenericsUtil.java:252)
at de.lmu.ifi.dbs.elki.utilities.optionhandling.parameters.ClassParameter.instantiateClass(ClassParameter.java:234)
at de.lmu.ifi.dbs.elki.utilities.optionhandling.parameters.ObjectParameter.instantiateClass(ObjectParameter.java:152)
at de.lmu.ifi.dbs.elki.database.StaticArrayDatabase$Parameterizer.makeOptions(StaticArrayDatabase.java:210)
at de.lmu.ifi.dbs.elki.utilities.optionhandling.AbstractParameterizer.make(AbstractParameterizer.java:116)
at de.lmu.ifi.dbs.elki.utilities.ClassGenericsUtil.tryInstantiate(ClassGenericsUtil.java:252)
at de.lmu.ifi.dbs.elki.utilities.optionhandling.parameters.ClassParameter.instantiateClass(ClassParameter.java:234)
at de.lmu.ifi.dbs.elki.utilities.optionhandling.parameters.ObjectParameter.instantiateClass(ObjectParameter.java:152)
at de.lmu.ifi.dbs.elki.workflow.InputStep$Parameterizer.makeOptions(InputStep.java:94)
at de.lmu.ifi.dbs.elki.utilities.optionhandling.AbstractParameterizer.make(AbstractParameterizer.java:116)
at de.lmu.ifi.dbs.elki.utilities.ClassGenericsUtil.tryInstantiate(ClassGenericsUtil.java:252)
at de.lmu.ifi.dbs.elki.utilities.optionhandling.parameterization.TrackParameters.tryInstantiate(TrackParameters.java:213)
at de.lmu.ifi.dbs.elki.KDDTask$Parameterizer.makeOptions(KDDTask.java:156)
at de.lmu.ifi.dbs.elki.utilities.optionhandling.AbstractParameterizer.make(AbstractParameterizer.java:116)
at de.lmu.ifi.dbs.elki.utilities.ClassGenericsUtil.tryInstantiate(ClassGenericsUtil.java:252)
at de.lmu.ifi.dbs.elki.utilities.optionhandling.parameterization.TrackParameters.tryInstantiate(TrackParameters.java:213)
at de.lmu.ifi.dbs.elki.application.KDDCLIApplication$Parameterizer.makeOptions(KDDCLIApplication.java:79)
at de.lmu.ifi.dbs.elki.utilities.optionhandling.AbstractParameterizer.make(AbstractParameterizer.java:116)
at de.lmu.ifi.dbs.elki.utilities.ClassGenericsUtil.tryInstantiate(ClassGenericsUtil.java:252)
at de.lmu.ifi.dbs.elki.utilities.optionhandling.parameterization.TrackParameters.tryInstantiate(TrackParameters.java:213)
at de.lmu.ifi.dbs.elki.gui.minigui.MiniGUI.doSetParameters(MiniGUI.java:372)
at de.lmu.ifi.dbs.elki.gui.minigui.MiniGUI.updateParameterTable(MiniGUI.java:359)
at de.lmu.ifi.dbs.elki.gui.minigui.MiniGUI$5.tableChanged(MiniGUI.java:277)
at javax.swing.table.AbstractTableModel.fireTableChanged(AbstractTableModel.java:296)
at javax.swing.table.AbstractTableModel.fireTableCellUpdated(AbstractTableModel.java:275)
at de.lmu.ifi.dbs.elki.gui.util.ParametersModel.setValueAt(ParametersModel.java:130)
at javax.swing.JTable.setValueAt(JTable.java:2741)
at javax.swing.JTable.editingStopped(JTable.java:4723)
at javax.swing.AbstractCellEditor.fireEditingStopped(AbstractCellEditor.java:141)
at javax.swing.AbstractCellEditor.stopCellEditing(AbstractCellEditor.java:85)
at javax.swing.plaf.basic.BasicTableUI$Handler.mousePressed(BasicTableUI.java:1010)
at javax.swing.plaf.basic.BasicTableUI$MouseInputHandler.mousePressed(BasicTableUI.java:798)
at java.awt.AWTEventMulticaster.mousePressed(AWTEventMulticaster.java:280)
at java.awt.Component.processMouseEvent(Component.java:6532)
at javax.swing.JComponent.processMouseEvent(JComponent.java:3324)
at java.awt.Component.processEvent(Component.java:6300)
at java.awt.Container.processEvent(Container.java:2236)
at java.awt.Component.dispatchEventImpl(Component.java:4891)
at java.awt.Container.dispatchEventImpl(Container.java:2294)
at java.awt.Component.dispatchEvent(Component.java:4713)
at java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4888)
at java.awt.LightweightDispatcher.processMouseEvent(Container.java:4522)
at java.awt.LightweightDispatcher.dispatchEvent(Container.java:4466)
at java.awt.Container.dispatchEventImpl(Container.java:2280)
at java.awt.Window.dispatchEventImpl(Window.java:2750)
at java.awt.Component.dispatchEvent(Component.java:4713)
at [...]