我想在R中使用cplexAPI我收到持久性錯誤。我正在使用Microsoft R Open 3.3.1,並在Windows 10上安裝了IBM ILOG CPLEX Optimization Studio版本:12.7.0.0。以下是我所做的以及結果。我將深入細節,希望你能看到我的錯誤!R:安裝cplexAPI錯誤
- 解壓tar文件到我桌面上的文件夾。
- 編輯文件:
C:\Users\zejas\Desktop\cplexAPI\cplexAPI\src\Makevars.win
說:
PKG_CPPFLAGS=-g -D_R_=1 -DUSE_R=1 -I"$C:\Program Files\IBM\ILOG\CPLEX_Studio127\cplex\include" PKG_LIBS=-L"$C:\Program Files\IBM\ILOG\CPLEX_Studio127\cplex\lib" -lm -lcplex1270
- 微軟把自己的自旋的
Reviron.site
文件。他們把Rcmd_environ
在:C:\Program Files\Microsoft\MRO-3.3.1\etc\Rcmd_environ
在那個文件我增加了底部三行: - 在
Environment Variables
System Variables
Path
我已經補充說: - 我重建包:
- 我試圖安裝該包的:
## from R.sh R_SHARE_DIR=${R_HOME}/share R_INCLUDE_DIR=${R_HOME}/include R_DOC_DIR=${R_HOME}/doc R_ARCH= ## from Rcmd R_OSTYPE=windows TEXINPUTS=.;${TEXINPUTS};${R_SHARE_DIR}/texmf/tex/latex; BIBINPUTS=.;${BIBINPUTS};${R_SHARE_DIR}/texmf/bibtex/bib; BSTINPUTS=.;${BSTINPUTS};${R_SHARE_DIR}/texmf/bibtex/bst; ## from etc/Renviron # R_PLATFORM='i386-pc-mingw32' R_PAPERSIZE_USER=${R_PAPERSIZE} R_PAPERSIZE=${R_PAPERSIZE-'a4'} # for Rd2dpf, reference manual R_RD4PDF=${R_RD4PDF-'times,inconsolata,hyper'} ## used for options("texi2dvi") # R_TEXI2DVICMD=${R_TEXI2DVICMD-${TEXI2DVI-'texi2dvi'}} ## used by INSTALL, check, build R_GZIPCMD=${R_GZIPCMD-'gzip'} ## Default zip/unzip commands R_UNZIPCMD=${R_UNZIPCMD-'unzip'} R_ZIPCMD=${R_ZIPCMD-'zip'} R_BZIPCMD=${R_BZIPCMD-'bzip2'} ## Default browser # R_BROWSER=${R_BROWSER-'open'} ## Default editor # EDITOR=${EDITOR-${VISUAL-vi}} ## Default pager # PAGER=${PAGER-''} ## Default PDF viewer # R_PDFVIEWER=${R_PDFVIEWER-'open'} # MAKE=${MAKE-make} SED=${SED-sed} # CPLEX_STUDIO_DIR=C:/Program Files/IBM/ILOG/CPLEX_Studio127 CPLEX_STUDIO_LIB=C:/Program Files/IBM/ILOG/CPLEX_Studio127/cplex/bin/x64_win64
%CPLEX_STUDIO_BINARIES127%; C:\Program Files (x86)\Intel\OpenCL SDK\6.1\bin\x64; C:\Program Files (x86)\Intel\OpenCL SDK\6.1\bin\x86; C:\Program Files (x86)\Intel\OpenCL SDK\6.1\bin\Pin; C:\Program Files (x86)\Intel\OpenCL SDK\6.1\bin\GTPin; C:\ProgramData\Oracle\Java\javapath;C:\Program Files\NVIDIA GPU Computing Toolkit\CUDA\v8.0\bin; C:\Program Files\NVIDIA GPU Computing Toolkit\CUDA\v8.0\libnvvp; C:\Program Files (x86)\Intel\iCLS Client\;C:\Program Files\Intel\iCLS Client\; C:\Windows\system32;C:\Windows;C:\Windows\System32\Wbem; C:\Windows\System32\WindowsPowerShell\v1.0\; C:\Program Files (x86)\Intel\Intel(R) Management Engine Components\DAL; C:\Program Files\Intel\Intel(R) Management Engine Components\DAL; C:\Program Files (x86)\Intel\Intel(R) Management Engine Components\IPT; C:\Program Files\Intel\Intel(R) Management Engine Components\IPT; C:\Program Files (x86)\Skype\Phone\; C:\Program Files\MATLAB\R2016b\bin; C:\Program Files\MATLAB\R2016a\bin; C:\Program Files\Microsoft\MRO-3.3.1\bin\x64; C:\Users\zejas\.dnx\bin;C:\Program Files\Microsoft DNX\Dnvm\; C:\Program Files\Microsoft SQL Server\130\Tools\Binn\; C:\Program Files (x86)\Windows Kits\8.1\Windows Performance Toolkit\; C:\WINDOWS\system32;C:\WINDOWS; C:\WINDOWS\System32\Wbem; C:\WINDOWS\System32\WindowsPowerShell\v1.0\; C:\Program Files (x86)\NVIDIA Corporation\PhysX\Common; C:\Program Files\Git\cmd; C:\Program Files\IBM\ILOG\CPLEX_Studio127\cplex\bin\x64_win64; C:\Program Files\IBM\ILOG\CPLEX_Studio127\cplex\include; C:\Rtools\bin
C:\Users\zejas>R CMD build --no-build-vignettes --no-manual --md5 C:\Users\zejas\Desktop\cplexAPI\cplexAPI * checking for file 'C:\Users\zejas\Desktop\cplexAPI\cplexAPI/DESCRIPTION' ... OK * preparing 'cplexAPI': * checking DESCRIPTION meta-information ... OK * cleaning src * checking vignette meta-information ... OK * checking for LF line-endings in source and make files * checking for empty or unneeded directories * adding MD5 file * building 'cplexAPI_1.3.2.tar.gz' Warning: file 'cplexAPI/cleanup' did not have execute permissions: corrected Warning: file 'cplexAPI/configure' did not have execute permissions: corrected
C:\Users\zejas>"C:\Program Files\Microsoft\MRO-3.3.1\bin\x64\R.exe" CMD INSTALL --build --no-multiarch ./cplexAPI.tar.gz * installing to library 'C:/Users/zejas/Documents/R/win-library/3.3' * installing *source* package 'cplexAPI' ... ** package 'cplexAPI' successfully unpacked and MD5 sums checked ** libs c:/Rtools/mingw_64/bin/gcc -m64 -I"C:/PROGRA~1/MICROS~1/MRO-33~1.1/include" -DNDEBUG -g -D_R_=1 -DUSE_R=1 -I":\Program Files\IBM\ILOG\CPLEX_Studio127\cplex\include" -I"C:/swarm/workspace/External- R-3.3.1/vendor/extsoft/include" -O2 -Wall -std=gnu99 -mtune=core2 -c cplexAPI.c -o cplexAPI.o In file included from cplexAPI.h:26:0, from cplexAPI.c:26: cplexR.h:50:27: fatal error: ilcplex/cplex.h: No such file or directory #include <ilcplex/cplex.h> ^ compilation terminated. make: *** [cplexAPI.o] Error 1 Warning: running command 'make -f "Makevars.win" -f "C:/PROGRA~1/MICROS~1/MRO-33~1.1/etc/x64/Makeconf" -f "C:/PROGRA~1/MICROS~1/MRO- 33~1.1/share/make/winshlib.mk" SHLIB="cplexAPI.dll" WIN=64 TCLBIN=64 OBJECTS="cplexAPI.o cplexR.o cplex_checkAPI.o cplex_longparamAPI.o init.o"' had status 2 ERROR: compilation failed for package 'cplexAPI' * removing 'C:/Users/zejas/Documents/R/win-library/3.3/cplexAPI'
有絕對是一個cplex.h
文件在那個目錄中!
C:\Program Files\IBM\ILOG\CPLEX_Studio127\cplex\include\ilcplex>dir
Volume in drive C is OS
Volume Serial Number is 0A1B-3F26
Directory of C:\Program Files\IBM\ILOG\CPLEX_Studio127\cplex\include\ilcplex
01/09/2017 10:43 AM <DIR> .
01/09/2017 10:43 AM <DIR> ..
01/09/2017 10:43 AM 2,499 annotation.xsd
01/09/2017 10:43 AM 72,321 cplex.h
01/09/2017 10:43 AM 6,429 cplexcheck.h
01/09/2017 10:43 AM 1,703 cplexdistmip.h
01/09/2017 10:43 AM 1,857 cplexdistmipl.h
01/09/2017 10:43 AM 1,857 cplexdistmips.h
01/09/2017 10:43 AM 2,569 cplexdistmipx.h
01/09/2017 10:43 AM 76,659 cplexl.h
01/09/2017 10:43 AM 2,826 cplexremote.h
01/09/2017 10:43 AM 2,944 cplexremotel.h
01/09/2017 10:43 AM 111,312 cplexremotemaster.h
01/09/2017 10:43 AM 107,895 cplexremotemasterl.h
01/09/2017 10:43 AM 107,777 cplexremotemasters.h
01/09/2017 10:43 AM 220,496 cplexremotemasterx.h
01/09/2017 10:43 AM 2,944 cplexremotes.h
01/09/2017 10:43 AM 3,379 cplexremoteworker.h
01/09/2017 10:43 AM 3,505 cplexremoteworkerl.h
01/09/2017 10:43 AM 3,511 cplexremoteworkers.h
01/09/2017 10:43 AM 4,554 cplexremoteworkerx.h
01/09/2017 10:43 AM 3,289 cplexremotex.h
01/09/2017 10:43 AM 76,354 cplexs.h
01/09/2017 10:43 AM 119,712 cplexx.h
01/09/2017 10:43 AM 70,061 cpxconst.h
01/09/2017 10:43 AM 675 ilm.h
01/09/2017 10:43 AM 7,158 ilocarray.h
01/09/2017 10:43 AM 186,959 ilocplex.h
01/09/2017 10:43 AM 205,973 ilocplexi.h
01/09/2017 10:43 AM 13,174 iloextrmgr.h
01/09/2017 10:43 AM 13,496 ilogoals.h
01/09/2017 10:43 AM 15,241 iloparam.h
01/09/2017 10:43 AM 5,705 solution.xsd
01/09/2017 10:43 AM 5,504 solution.xsl
01/09/2017 10:43 AM 1,397 vmc.dtd
01/09/2017 10:43 AM 2,837 vmc.xsd
34 File(s) 1,464,572 bytes
2 Dir(s) 333,053,566,976 bytes free
任何想法?
從@ c0bra與輸入更新和@rkersh
我更新Makevars.win
:
PKG_CPPFLAGS=-g -D_R_=1 -DUSE_R=1 -I"C:\Program Files\IBM\ILOG\CPLEX_Studio127\cplex\include"
PKG_LIBS=-L"C:\Program Files\IBM\ILOG\CPLEX_Studio127\cplex\lib" -lm -lcplex1270
重建在命令行:
C:\Users\zejas>R CMD build --no-build-vignettes --no-manual --md5 C:\Users\zejas\Desktop\cplexAPI\cplexAPI
* checking for file 'C:\Users\zejas\Desktop\cplexAPI\cplexAPI/DESCRIPTION' ... OK
* preparing 'cplexAPI':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* checking vignette meta-information ... OK
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* adding MD5 file
* building 'cplexAPI_1.3.2.tar.gz'
Warning: file 'cplexAPI/cleanup' did not have execute permissions: corrected
Warning: file 'cplexAPI/configure' did not have execute permissions: corrected
我嘗試從安裝命令行:
C:\Users\zejas>"C:\Program Files\Microsoft\MRO-3.3.1\bin\x64\R.exe" CMD INSTALL --build --no-multiarch .\cplexAPI_1.3.2.tar.gz
* installing to library 'C:/Users/zejas/Documents/R/win-library/3.3'
* installing *source* package 'cplexAPI' ...
** package 'cplexAPI' successfully unpacked and MD5 sums checked
** libs
c:/Rtools/mingw_64/bin/gcc -m64 -I"C:/PROGRA~1/MICROS~1/MRO-33~1.1/include" -DNDEBUG -g -D_R_=1 -DUSE_R=1 -I"C:\Program Files\IBM\ILOG\CPLEX_Studio127\cplex\include" -I"C:/swarm/workspace/External-R-3.3.1/vendor/extsoft/include" -O2 -Wall -std=gnu99 -mtune=core2 -c cplexAPI.c -o cplexAPI.o
cplexAPI.c: In function 'addChannel':
cplexAPI.c:5198:5: warning: implicit declaration of function 'CPXaddchannel' [-Wimplicit-function-declaration]
newch = CPXaddchannel(R_ExternalPtrAddr(env));
^
cplexAPI.c:5198:11: warning: assignment makes pointer from integer without a cast
newch = CPXaddchannel(R_ExternalPtrAddr(env));
^
cplexAPI.c: In function 'delChannel':
cplexAPI.c:5234:5: warning: implicit declaration of function 'CPXdelchannel' [-Wimplicit-function-declaration]
CPXdelchannel(R_ExternalPtrAddr(env), &delch);
^
c:/Rtools/mingw_64/bin/gcc -m64 -I"C:/PROGRA~1/MICROS~1/MRO-33~1.1/include" -DNDEBUG -g -D_R_=1 -DUSE_R=1 -I"C:\Program Files\IBM\ILOG\CPLEX_Studio127\cplex\include" -I"C:/swarm/workspace/External-R-3.3.1/vendor/extsoft/include" -O2 -Wall -std=gnu99 -mtune=core2 -c cplexR.c -o cplexR.o
c:/Rtools/mingw_64/bin/gcc -m64 -I"C:/PROGRA~1/MICROS~1/MRO-33~1.1/include" -DNDEBUG -g -D_R_=1 -DUSE_R=1 -I"C:\Program Files\IBM\ILOG\CPLEX_Studio127\cplex\include" -I"C:/swarm/workspace/External-R-3.3.1/vendor/extsoft/include" -O2 -Wall -std=gnu99 -mtune=core2 -c cplex_checkAPI.c -o cplex_checkAPI.o
c:/Rtools/mingw_64/bin/gcc -m64 -I"C:/PROGRA~1/MICROS~1/MRO-33~1.1/include" -DNDEBUG -g -D_R_=1 -DUSE_R=1 -I"C:\Program Files\IBM\ILOG\CPLEX_Studio127\cplex\include" -I"C:/swarm/workspace/External-R-3.3.1/vendor/extsoft/include" -O2 -Wall -std=gnu99 -mtune=core2 -c cplex_longparamAPI.c -o cplex_longparamAPI.o
c:/Rtools/mingw_64/bin/gcc -m64 -I"C:/PROGRA~1/MICROS~1/MRO-33~1.1/include" -DNDEBUG -g -D_R_=1 -DUSE_R=1 -I"C:\Program Files\IBM\ILOG\CPLEX_Studio127\cplex\include" -I"C:/swarm/workspace/External-R-3.3.1/vendor/extsoft/include" -O2 -Wall -std=gnu99 -mtune=core2 -c init.c -o init.o
c:/Rtools/mingw_64/bin/gcc -m64 -shared -s -static-libgcc -o cplexAPI.dll tmp.def cplexAPI.o cplexR.o cplex_checkAPI.o cplex_longparamAPI.o init.o -LC:\Program Files\IBM\ILOG\CPLEX_Studio127\cplex\lib -lm -lcplex1270 -LC:/swarm/workspace/External-R-3.3.1/vendor/extsoft/lib/x64 -LC:/swarm/workspace/External-R-3.3.1/vendor/extsoft/lib -LC:/PROGRA~1/MICROS~1/MRO-33~1.1/bin/x64 -lR
C:/Rtools/mingw_64/bin/../lib/gcc/x86_64-w64-mingw32/4.9.3/../../../../x86_64-w64-mingw32/bin/ld.exe: cannot find -lcplex1270
collect2.exe: error: ld returned 1 exit status
no DLL was created
ERROR: compilation failed for package 'cplexAPI'
* removing 'C:/Users/zejas/Documents/R/win-library/3.3/cplexAPI'
我編輯Makevars。贏得
PKG_CPPFLAGS=-g -D_R_=1 -DUSE_R=1 -I"C:/PROGRA~1/IBM/ILOG/CPLEX_Studio127/cplex/include"
PKG_LIBS=-L"C:/PROGRA~1/IBM/ILOG/CPLEX_Studio127/cplex/include/lib" -lm -lcplex1270
我重建:
C:\Users\zejas>R CMD build --no-build-vignettes --no-manual --md5 C:\Users\zejas\Desktop\cplexAPI\cplexAPI
* checking for file 'C:\Users\zejas\Desktop\cplexAPI\cplexAPI/DESCRIPTION' ... OK
* preparing 'cplexAPI':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* checking vignette meta-information ... OK
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* adding MD5 file
* building 'cplexAPI_1.3.2.tar.gz'
Warning: file 'cplexAPI/cleanup' did not have execute permissions: corrected
Warning: file 'cplexAPI/configure' did not have execute permissions: corrected
我嘗試安裝:
C:\Users\zejas>"C:\Program Files\Microsoft\MRO-3.3.1\bin\x64\R.exe" CMD INSTALL --build --no-multiarch .\cplexAPI_1.3.2.tar.gz
* installing to library 'C:/Users/zejas/Documents/R/win-library/3.3'
* installing *source* package 'cplexAPI' ...
** package 'cplexAPI' successfully unpacked and MD5 sums checked
** libs
c:/Rtools/mingw_64/bin/gcc -m64 -I"C:/PROGRA~1/MICROS~1/MRO-33~1.1/include" -DNDEBUG -g -D_R_=1 -DUSE_R=1 -I"C:/PROGRA~1/IBM/ILOG/CPLEX_Studio127/cplex/include" -I"C:/swarm/workspace/External-R-3.3.1/vendor/extsoft/include" -O2 -Wall -std=gnu99 -mtune=core2 -c cplexAPI.c -o cplexAPI.o
cplexAPI.c: In function 'addChannel':
cplexAPI.c:5198:5: warning: implicit declaration of function 'CPXaddchannel' [-Wimplicit-function-declaration]
newch = CPXaddchannel(R_ExternalPtrAddr(env));
^
cplexAPI.c:5198:11: warning: assignment makes pointer from integer without a cast
newch = CPXaddchannel(R_ExternalPtrAddr(env));
^
cplexAPI.c: In function 'delChannel':
cplexAPI.c:5234:5: warning: implicit declaration of function 'CPXdelchannel' [-Wimplicit-function-declaration]
CPXdelchannel(R_ExternalPtrAddr(env), &delch);
^
c:/Rtools/mingw_64/bin/gcc -m64 -I"C:/PROGRA~1/MICROS~1/MRO-33~1.1/include" -DNDEBUG -g -D_R_=1 -DUSE_R=1 -I"C:/PROGRA~1/IBM/ILOG/CPLEX_Studio127/cplex/include" -I"C:/swarm/workspace/External-R-3.3.1/vendor/extsoft/include" -O2 -Wall -std=gnu99 -mtune=core2 -c cplexR.c -o cplexR.o
c:/Rtools/mingw_64/bin/gcc -m64 -I"C:/PROGRA~1/MICROS~1/MRO-33~1.1/include" -DNDEBUG -g -D_R_=1 -DUSE_R=1 -I"C:/PROGRA~1/IBM/ILOG/CPLEX_Studio127/cplex/include" -I"C:/swarm/workspace/External-R-3.3.1/vendor/extsoft/include" -O2 -Wall -std=gnu99 -mtune=core2 -c cplex_checkAPI.c -o cplex_checkAPI.o
c:/Rtools/mingw_64/bin/gcc -m64 -I"C:/PROGRA~1/MICROS~1/MRO-33~1.1/include" -DNDEBUG -g -D_R_=1 -DUSE_R=1 -I"C:/PROGRA~1/IBM/ILOG/CPLEX_Studio127/cplex/include" -I"C:/swarm/workspace/External-R-3.3.1/vendor/extsoft/include" -O2 -Wall -std=gnu99 -mtune=core2 -c cplex_longparamAPI.c -o cplex_longparamAPI.o
c:/Rtools/mingw_64/bin/gcc -m64 -I"C:/PROGRA~1/MICROS~1/MRO-33~1.1/include" -DNDEBUG -g -D_R_=1 -DUSE_R=1 -I"C:/PROGRA~1/IBM/ILOG/CPLEX_Studio127/cplex/include" -I"C:/swarm/workspace/External-R-3.3.1/vendor/extsoft/include" -O2 -Wall -std=gnu99 -mtune=core2 -c init.c -o init.o
c:/Rtools/mingw_64/bin/gcc -m64 -shared -s -static-libgcc -o cplexAPI.dll tmp.def cplexAPI.o cplexR.o cplex_checkAPI.o cplex_longparamAPI.o init.o -LC:/PROGRA~1/IBM/ILOG/CPLEX_Studio127/cplex/include/lib -lm -lcplex1270 -LC:/swarm/workspace/External-R-3.3.1/vendor/extsoft/lib/x64 -LC:/swarm/workspace/External-R-3.3.1/vendor/extsoft/lib -LC:/PROGRA~1/MICROS~1/MRO-33~1.1/bin/x64 -lR
C:/Rtools/mingw_64/bin/../lib/gcc/x86_64-w64-mingw32/4.9.3/../../../../x86_64-w64-mingw32/bin/ld.exe: cannot find -lcplex1270
collect2.exe: error: ld returned 1 exit status
no DLL was created
ERROR: compilation failed for package 'cplexAPI'
* removing 'C:/Users/zejas/Documents/R/win-library/3.3/cplexAPI'
這些都是新的錯誤!
我真的希望這可以工作。我試了一下,得到了同樣的錯誤。該項目的開發人員也在他的指示中有'$'謝謝! – jjhold
在最終安裝輸出中,您可以看到包含路徑中缺少「C」(例如'-I「:\ Program Files \ IBM \ ILOG \ CPLEX_Studio127 \ cplex \ include」')。另外,在輸出中,它看起來像其他路徑正在使用正斜槓。這些只是在黑暗中拍攝,但也許嘗試使用'PKG_CPPFLAGS = -g -D_R_ = 1 -DUSE_R = 1 -I「C:/ Program Files/IBM/ILOG/CPLEX_Studio127/cplex/include」等。 'Makevars.win'。另外,你可以嘗試使用'C:\ PROGRA〜1'而不是'C:/ Program Files',這樣你就沒有任何空格了...... – rkersh
@rkersh我也一直想知道缺少' C'在輸出和空間。令人困惑的是,輸入「C」。所以我嘗試了'C:\ PROGRA〜1'的想法,並將它與@c0bra結合起來,並刪除了'$'。這些組合都不起作用。你對空間的擔憂讓我想到環境變量。謝謝! – jjhold